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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3921942_3924419_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3921942 - 3924419
Intron Length:
2478

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCA|GCGGGGAGC
5'SS Class:
weak_major
3'SS Sequence:
TCTTAACAACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GAGTTCTTAACA
Flanking Amino Acid:
CWAQRQGQDGTQECICTINS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.03
1.3
56.8
37.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
60.5
0.24
1
53.5
40.6
Minor 5ss
17.6
-3.7
3.8
29.4
37.3
Minor BPS
73.9
0.75
1.2
73.07
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008023
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008322
3921898 - 3926358
4461