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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3924996_3925174_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3924996 - 3925174
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCCAGCAGC
5'SS Class:
major
3'SS Sequence:
GTGTGTGTGCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
ACCTCCTCACAG
Flanking Amino Acid:
KHPRERPALPGGSKSSPCSV
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
65.1
43.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
50.2
0
1.3
48.5
48.3
Minor 5ss
25.3
-2.8
3.7
35.8
40.7
Minor BPS
45
-0.5
2
46.98
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008023
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008322
3921898 - 3926358
4461