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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3963768_3963941_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3963768 - 3963941
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
CCACCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
CCTTTGCCACCT
Flanking Amino Acid:
LVASYIIFFKPEYKFVDPIC
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
66.9
0.38
0.8
57.5
33
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
36.7
-0.9
2.4
55.59
46.7

Associated Gene:

Gene:
SLC30A2
Ensembl Gene ID:
ENSAPLG00000026102
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019360
3962407 - 3964492
2086