About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3965800_3965893_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3965800 - 3965893
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCACAG
5'SS Class:
major
3'SS Sequence:
CCGCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCCTCCTCACCG
Flanking Amino Acid:
IVLTAAAFYHRYYHSLFTGY
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
53.6
45.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
66.8
0.38
0.8
57.3
33.3
Minor 5ss
35.8
-1.6
3.3
47.5
47.9
Minor BPS
47.8
-0.3
2
50.75
49.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021570
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044236
3964708 - 3971251
6544