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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3966329_3966408_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3966329 - 3966408
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCAAATTTAATT
Flanking Amino Acid:
PLSVIEGRREPSDRFFPYAA
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66.3
39.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.7
0.6
0.7
72.2
26
Minor 5ss
28.7
-2.4
3.4
38.8
46.3
Minor BPS
51
0.11
1.6
61.98
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021570
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044236
3964708 - 3971251
6544