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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3967251_3967335_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3967251 - 3967335
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CGGCCCCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGACGGTACCT
Flanking Amino Acid:
VDKIVHTTLEIIKDRLLPHR
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
65
0.34
0.9
57.5
33.2
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
39.1
-0.7
2.7
59.67
49.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021570
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044236
3964708 - 3971251
6544