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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3968052_3969777_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3968052 - 3969777
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
ATCCCCCAAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
AGTGCCTGACCC
Flanking Amino Acid:
RCDKDNADYEKFDYQELLHN
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
62.5
43.8
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
49.9
-0
1.1
50.1
31.4
Minor 5ss
35
-1.7
2.9
40
40.1
Minor BPS
49.7
-0
1.9
62.52
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021570
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044236
3964708 - 3971251
6544