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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3989238_3989962_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3989238 - 3989962
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
TTCATGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGGCTTCAAAT
Flanking Amino Acid:
MATSDIQVKELEKR
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
63.7
41.8
Major BPS
100
1.24
0.5
100
0
Major PPT
72.7
0.51
0.9
65.1
41.1
Minor 5ss
32.1
-2
3.4
40.7
40.7
Minor BPS
50
0.08
1.7
67.66
43.2

Associated Gene:

Gene:
STMN1
Ensembl Gene ID:
ENSAPLG00000009986
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010405
3988742 - 3991845
3104