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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_399545_400492_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
399545 - 400492
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGGTTCAAAACT
Flanking Amino Acid:
KEREAKEMHERKRQREEEIE
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.8
0.8
0.8
77.2
37
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
51.5
0.12
2
73.11
43.7

Associated Gene:

Gene:
DNAJC8
Ensembl Gene ID:
ENSAPLG00000003576
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029446
211818 - 406228
194411
ENSAPLT00000003669
211818 - 406228
194411