Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_400569_405651_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

400569 - 405651

Intron Length:

5083

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATCAGC

5'SS Class:

major

3'SS Sequence:

CTCTGTCTCCAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGACAG

U12 Branch Point Sequence:

TCTGTCTCCAAG

Flanking Amino Acid:

REREWQKNFELQHKENCCKD

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

42.1

Major BPS

40.9

-0.5

1.4

44.5

38.7

Major PPT

65.4

0.35

63.1

37.4

Minor 5ss

39.8

-1.1

2.8

52.6

44.1

Minor BPS

41.7

-0.8

2.1

47.8

45.6

Associated Gene:

Gene:

DNAJC8

Ensembl Gene ID:

ENSAPLG00000003576

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029446

211818 - 406228

194411