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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4009754_4011444_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4009754 - 4011444
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACTTTTTGAAAT
Flanking Amino Acid:
KSGVLDTLTKVLVALYEEPE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
57.2
41.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
28.1
-2.5
3.6
32.1
42.7
Minor BPS
57
0.3
1.5
71.88
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009940
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010345
4009508 - 4014850
5343