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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4011494_4012404_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
4011494 - 4012404
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ATCCAAATACCAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
AAATACTTAACA
Flanking Amino Acid:
EEPEKPNSALDFLKHHLGAS
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
56
43.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
58.9
0.2
1
49.3
42.1
Minor 5ss
94.2
1.49
0.8
86.6
30.5
Minor BPS
70.1
0.63
1.4
73.67
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009940
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010345
4009508 - 4014850
5343