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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4012535_4014805_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4012535 - 4014805
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCTCTTTAAAT
Flanking Amino Acid:
LEENKNLKTKLAQYEPPQEE
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.7
32.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.2
0.52
0.9
66
39.5
Minor 5ss
34.3
-1.8
3.6
49.9
46.6
Minor BPS
78.4
0.97
1.3
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009940
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010345
4009508 - 4014850
5343