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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4020279_4021115_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4020279 - 4021115
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCACCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGAAT
U12 Branch Point Sequence:
TCCCCCTCACCT
Flanking Amino Acid:
TDAGLEKLHLSFYLTSIYDH
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
54.5
0.11
1.4
65.3
38.6
Major PPT
68.9
0.42
0.8
65.5
28.8
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
51.1
0.11
1.9
69.41
47.1

Associated Gene:

Gene:
RRAGC
Ensembl Gene ID:
ENSAPLG00000009835
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010254
4016585 - 4025070
8486