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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4021231_4022718_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4021231 - 4022718
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTAAAAA
Flanking Amino Acid:
LENLLNIFISNSGIEKAFLF
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.1
0.61
1
78.9
27.1
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
55.8
0.18
1.7
68.66
37.8

Associated Gene:

Gene:
RRAGC
Ensembl Gene ID:
ENSAPLG00000009835
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010254
4016585 - 4025070
8486