About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4152277_4152761_F

Intron Information:

Intron Rank:
138486
Intron Class:
major
Intron Phase:
Intron Coordinates:
4152277 - 4152761
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
CTGTCCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTGTCCTGTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
74
0.54
1
68.2
37.5
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
56.8
0.21
1.9
67.99
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024566
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019804
4123829 - 4152967
29139