Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4170219_4173392_F

Intron Information:

Intron Rank:

145063

Intron Class:

major

Intron Phase:

Intron Coordinates:

4170219 - 4173392

Intron Length:

3174

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTCATCACTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

CTGTTCATCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

36.6

Major BPS

84.8

0.86

85.7

34.9

Major PPT

0.61

0.9

70.7

34.6

Minor 5ss

36.9

-1.5

3.2

48.2

47.9

Minor BPS

49.7

0.06

2.1

71.87

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028240

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026175

4170001 - 4177675

7675