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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4204551_4206071_F

Intron Information:

Intron Rank:
140125
Intron Class:
major
Intron Phase:
Intron Coordinates:
4204551 - 4206071
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTAACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTCTCCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
73.7
0.53
0.9
66.4
34.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
67.8
0.54
1.7
80.63
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025358
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035983
4204111 - 4206427
2317