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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4206191_4206615_F

Intron Information:

Intron Rank:
140126
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
4206191 - 4206615
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCACT
5'SS Class:
weak_major
3'SS Sequence:
TCCATTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCCAT
U12 Branch Point Sequence:
CTGTCTTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
68
42.9
Major BPS
68.5
0.46
1.2
78.5
35.1
Major PPT
81.5
0.71
0.8
75.7
32.8
Minor 5ss
62.8
0.43
2
76.3
38.9
Minor BPS
48.4
-0
2
67.18
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025358
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044521
4205751 - 4208288
2538