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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4206667_4208196_F

Intron Information:

Intron Rank:
140127
Intron Class:
major
Intron Phase:
Intron Coordinates:
4206667 - 4208196
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.5
0.6
0.9
74.2
36.2
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025358
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044521
4205751 - 4208288
2538