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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4315136_4315725_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4315136 - 4315725
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
AGCAGATCAATT
Flanking Amino Acid:
QKIQTRKDLLDKTHKVKVKK
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
70.9
34.5
Major BPS
65
0.37
1.3
75
40
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
25.6
-2.8
3.5
34
43.2
Minor BPS
40.6
-0.6
2
53.45
41.7

Associated Gene:

Gene:
UTP11
Ensembl Gene ID:
ENSAPLG00000014597
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015229
4315052 - 4320298
5247