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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4317587_4318301_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4317587 - 4318301
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTGGCAAAACT
Flanking Amino Acid:
VEMKRVAEAKKIERLKSELH
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
89.3
0.88
0.6
85
22.7
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
47.3
-0.1
2.4
76.44
46

Associated Gene:

Gene:
UTP11
Ensembl Gene ID:
ENSAPLG00000014597
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015229
4315052 - 4320298
5247