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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4318658_4319095_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4318658 - 4319095
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
AAATGCTGAACT
Flanking Amino Acid:
EKKKDYKLRAEDYHKKQNAL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
53.4
45.5
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
29.4
-2.4
2.8
28.8
36.8
Minor BPS
57
0.3
1.9
73.96
42.1

Associated Gene:

Gene:
UTP11
Ensembl Gene ID:
ENSAPLG00000014597
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015229
4315052 - 4320298
5247