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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4319158_4319261_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4319158 - 4319261
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
GGCTCCTTCACT
Flanking Amino Acid:
RQRQHRERAQPASRKKLGLL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
89.1
0.88
0.6
85
22.4
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
65.9
0.58
1.8
77.47
44.6

Associated Gene:

Gene:
UTP11
Ensembl Gene ID:
ENSAPLG00000014597
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015229
4315052 - 4320298
5247