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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4320088_4344148_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4320088 - 4344148
Intron Length:
24061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
CTCCTTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CGGTGCTGAGCG
Flanking Amino Acid:
AARAAPGRRAAGEGGPQTGT
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
79.7
0.67
0.7
72.1
32.5
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
42.5
-0.7
2.1
44.77
46.9

Associated Gene:

Gene:
FHL3
Ensembl Gene ID:
ENSAPLG00000014730
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019078
4318972 - 4346395
27424