Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4354715_4355028_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4354715 - 4355028

Intron Length:

314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGCAGT

5'SS Class:

major

3'SS Sequence:

CTTTTCTTGGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

AGATTTTGATGT

Flanking Amino Acid:

WDNGTFPGWPKETSSALTHA

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.64

69.1

43.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

82.7

0.74

0.9

80.4

31.5

Minor 5ss

36.1

-1.6

49.5

46.5

Minor BPS

43.1

-0.4

1.8

56.21

40.1

Associated Gene:

Gene:

SF3A3

Ensembl Gene ID:

ENSAPLG00000014900

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044455

4351650 - 4358963

7314

ENSAPLT00000015585

4351650 - 4358963

7314