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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4355507_4355836_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4355507 - 4355836
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
TGCTTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTGATCTCATCT
Flanking Amino Acid:
ALLALGLKCGGTLEERAQRL
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
62.5
43.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.8
0.54
0.8
68.9
31.7
Minor 5ss
30.9
-2.2
3
31.2
42.3
Minor BPS
47.9
-0
1.8
65.47
44.8

Associated Gene:

Gene:
SF3A3
Ensembl Gene ID:
ENSAPLG00000014900
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015585
4351650 - 4358963
7314
ENSAPLT00000044455
4351650 - 4358963
7314