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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4367972_4368723_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4367972 - 4368723
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATCGACA
Flanking Amino Acid:
VIPDSDLHVIGSDVTVQISS
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.4
0.53
1
69.7
40.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
50.1
-0
1.9
67.31
39.1

Associated Gene:

Gene:
INPP5B
Ensembl Gene ID:
ENSAPLG00000015547
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016262
4366782 - 4383751
16970