About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4368835_4373743_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4368835 - 4373743
Intron Length:
4909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TGAAACTTGATT
Flanking Amino Acid:
FLQELSRCSPEVVGSEGIKQ
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.7
36.9
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
32
-2.1
3.6
48.4
47.3
Minor BPS
56
0.27
1.6
70.68
39.9

Associated Gene:

Gene:
INPP5B
Ensembl Gene ID:
ENSAPLG00000015547
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016262
4366782 - 4383751
16970