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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4375958_4376374_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4375958 - 4376374
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTCTTCTAAT
Flanking Amino Acid:
DTEPPDIYCVGFQELDLSKE
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.7
34.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.1
0.66
0.9
74.4
34
Minor 5ss
31.4
-2.1
3.2
35.2
41.4
Minor BPS
49.8
0.07
2
73.22
43.5

Associated Gene:

Gene:
INPP5B
Ensembl Gene ID:
ENSAPLG00000015547
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016262
4366782 - 4383751
16970