About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4380907_4381058_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4380907 - 4381058
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACC
Flanking Amino Acid:
ANPSKGFLLPDSEITIELEL
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.4
0.59
1
73.3
41.5
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
79.9
0.92
1
82.49
30.8

Associated Gene:

Gene:
INPP5B
Ensembl Gene ID:
ENSAPLG00000015547
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016262
4366782 - 4383751
16970