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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4382429_4382810_F

Intron Information:

Intron Rank:
19
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
4382429 - 4382810
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ATCTTTGGATCAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TCTTCCTTAACC
Flanking Amino Acid:
CLDKGMHDTLLGSNHSVAEA
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48
-0.1
1.4
53.6
45.9
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
66.7
0.38
1.1
66.5
43.5
Minor 5ss
96.3
1.56
0.7
94.6
16.8
Minor BPS
90.7
1.26
0.9
90.55
30.7

Associated Gene:

Gene:
INPP5B
Ensembl Gene ID:
ENSAPLG00000015547
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016262
4366782 - 4383751
16970