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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4392687_4393379_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4392687 - 4393379
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
ATGCCTCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTCCCTGATG
Flanking Amino Acid:
IRTHTGEKPFRCEHDGCGKA
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
64.4
42.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
70.3
0.46
1
66.9
39
Minor 5ss
39.6
-1.2
3.1
52.4
44.9
Minor BPS
60.5
0.19
1.8
67.15
41

Associated Gene:

Gene:
MTF1
Ensembl Gene ID:
ENSAPLG00000016056
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016768
4385417 - 4400627
15211