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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4395571_4397130_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4395571 - 4397130
Intron Length:
1560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTTAC
5'SS Class:
major
3'SS Sequence:
TTCTATTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTTTTCTATTT
Flanking Amino Acid:
DSELRENSNLTHGQDLSTIS
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70
30
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
78.1
0.63
1
72.8
42
Minor 5ss
36.9
-1.5
2.9
45.1
38.2
Minor BPS
49.4
0.03
1.9
71.32
40.7

Associated Gene:

Gene:
MTF1
Ensembl Gene ID:
ENSAPLG00000016056
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016768
4385417 - 4400627
15211