About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4397234_4397794_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4397234 - 4397794
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATATATTT
Flanking Amino Acid:
TTNQEDSKQTAALIEAFNGH
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
78.1
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.6
0.8
0.9
84.2
30.7
Minor 5ss
37.7
-1.4
3.4
57.7
46.5
Minor BPS
48
-0
2
72.17
39

Associated Gene:

Gene:
MTF1
Ensembl Gene ID:
ENSAPLG00000016056
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016768
4385417 - 4400627
15211