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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4398349_4399243_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4398349 - 4399243
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCCTTTAAG
Flanking Amino Acid:
TGSPQSQEQMPQVPKVVEKV
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
80.9
32.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83
0.74
0.9
87.8
22.9
Minor 5ss
35.8
-1.6
2.6
41.2
39
Minor BPS
68.6
0.44
1.8
77.1
39.8

Associated Gene:

Gene:
MTF1
Ensembl Gene ID:
ENSAPLG00000016056
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016768
4385417 - 4400627
15211