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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4399311_4400093_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4399311 - 4400093
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GTGTCTTGAACT
Flanking Amino Acid:
TTALPVAGNTGSPVQQIGLS
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
81.9
0.72
0.8
78.3
30.6
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
70.2
0.71
1.4
81.67
39.7

Associated Gene:

Gene:
MTF1
Ensembl Gene ID:
ENSAPLG00000016056
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016768
4385417 - 4400627
15211