About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4408707_4408860_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4408707 - 4408860
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TCTCCCTCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
CTGTCCTTCATA
Flanking Amino Acid:
ICLGDVEHIYRYCHVNVPDE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.5
41.4
Major BPS
75
0.62
1.1
77.2
36
Major PPT
74
0.54
0.7
69.5
24.3
Minor 5ss
39.2
-1.2
3
50.7
46
Minor BPS
63.2
0.41
1.8
70.56
42.6

Associated Gene:

Gene:
YRDC
Ensembl Gene ID:
ENSAPLG00000025208
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048400
4408060 - 4410684
2625
ENSAPLT00000041654
4407649 - 4410684
3036
ENSAPLT00000024209
4408060 - 4410339
2280