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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4413647_4414047_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4413647 - 4414047
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
GTCGCTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
CAGTGCTGAAAA
Flanking Amino Acid:
LDAAQRYAIKVAFHIQPYKG
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
78.7
0.65
0.9
72.4
37.7
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
46.5
-0.2
2
54.66
43.6

Associated Gene:

Gene:
MANEAL
Ensembl Gene ID:
ENSAPLG00000024518
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037566
4411949 - 4414916
2968