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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4439796_4440497_R

Intron Information:

Intron Rank:
147127
Intron Class:
major
Intron Phase:
Intron Coordinates:
4439796 - 4440497
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
AAACACTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
64.9
0.37
1
67
29.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
42.9
-0.4
1.8
55.8
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026469
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020657
4438718 - 4440530
1813