About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4464522_4469396_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4464522 - 4469396
Intron Length:
4875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTCG
5'SS Class:
strong_major
3'SS Sequence:
TCCACTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAC
U12 Branch Point Sequence:
TTCCTCTCCACT
Flanking Amino Acid:
AEVNVSTGLAAPTPVTDIRT
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.6
Major BPS
53.4
0.09
1.1
57.3
37.7
Major PPT
78
0.63
0.8
68.8
37
Minor 5ss
43.1
-0.8
3
56.2
48.2
Minor BPS
49.7
0.06
2
73.07
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016384
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044600
4447496 - 4483546
36051
ENSAPLT00000017112
4446364 - 4483546
37183