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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4469522_4471826_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4469522 - 4471826
Intron Length:
2305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
CATCATTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATCATTT
Flanking Amino Acid:
TEYEVKYYEKDQRDQSYSTV
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.8
0.56
0.9
68.7
36.5
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
47.3
-0.1
2
67.82
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016384
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044600
4447496 - 4483546
36051
ENSAPLT00000017112
4446364 - 4483546
37183