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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4473290_4473533_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4473290 - 4473533
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCATCCTGATTC
Flanking Amino Acid:
SMVIGVMVWRRQCGYSKASQ
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
79.8
0.67
0.9
73.5
36.3
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
49
-0.1
1.7
55.69
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016384
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017112
4446364 - 4483546
37183
ENSAPLT00000044600
4447496 - 4483546
36051