Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4475630_4477790_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4475630 - 4477790

Intron Length:

2161

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACGGGG

5'SS Class:

major

3'SS Sequence:

TCTGTCCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTCAT

U12 Branch Point Sequence:

TGTCTGTCCATG

Flanking Amino Acid:

VIRLEGVITRGNTMMIVTEY

Intron Amino Acid Position:

622

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.2

58.7

46.2

Major BPS

69.4

0.48

1.2

71.6

36.4

Major PPT

0.59

0.9

70.2

35.4

Minor 5ss

34.2

-1.8

3.6

46.8

48.5

Minor BPS

37.4

-1.1

2.4

45.05

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016384

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044600

4447496 - 4483546

36051

ENSAPLT00000017112

4446364 - 4483546

37183