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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_447761_451265_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
447761 - 451265
Intron Length:
3505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TGTCTCCGAACA
Flanking Amino Acid:
EEPQDLPEQPVKKAKMQESR
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
50.7
0.02
1.8
67.52
38

Associated Gene:

Gene:
EYA3
Ensembl Gene ID:
ENSAPLG00000002973
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036583
447666 - 482659
34994
ENSAPLT00000022312
447666 - 483738
36073
ENSAPLT00000003059
447666 - 483753
36088
ENSAPLT00000043657
444992 - 482659
37668