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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4496807_4496945_R

Intron Information:

Intron Rank:
137322
Intron Class:
major
Intron Phase:
Intron Coordinates:
4496807 - 4496945
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCCC
5'SS Class:
major
3'SS Sequence:
TCTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CAATGCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
64.3
40
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
41.6
-0.9
2.7
54.6
42.5
Minor BPS
46.9
-0.2
2
55.88
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021379
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042934
4494125 - 4497145
3021