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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4508326_4508656_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4508326 - 4508656
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
PSARVKRLSKRSSKNNFITP
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79.5
0.66
0.9
77.4
34.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
CDCA8
Ensembl Gene ID:
ENSAPLG00000003470
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003550
4506413 - 4510539
4127