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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4508737_4509113_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4508737 - 4509113
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTAATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGGGCATTAACT
Flanking Amino Acid:
VENTNPRTGKVRASIKKAPV
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.5
0.55
1
70.1
44.8
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
59
0.36
1.8
72.51
43.9

Associated Gene:

Gene:
CDCA8
Ensembl Gene ID:
ENSAPLG00000003470
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003550
4506413 - 4510539
4127