About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4509251_4509575_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4509251 - 4509575
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTGTTCTCAACT
Flanking Amino Acid:
IQTPLKVIKKVEKSKQVIEA
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85
0.79
0.7
77.9
30.9
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
68.1
0.65
1.5
80.75
40.9

Associated Gene:

Gene:
CDCA8
Ensembl Gene ID:
ENSAPLG00000003470
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003550
4506413 - 4510539
4127