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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_4510163_4510424_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4510163 - 4510424
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGGGGA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTCTTAAAAA
Flanking Amino Acid:
LREMNWLEYFAKGGSKKVLE
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
56.9
42.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
27.7
-2.6
3.6
34.9
43.5
Minor BPS
56.6
0.2
1.8
66.5
40.2

Associated Gene:

Gene:
CDCA8
Ensembl Gene ID:
ENSAPLG00000003470
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003550
4506413 - 4510539
4127